![]() Depending on what things you had going on, you may need to fixup things like quotes, dashes, etc., if you had the "wrong" style of character. (Note that the less than and greater than signs in the command should be typed on the commandline.) Be sure to open the cleaned.xml in a text editor to make sure everything looks okay. Looks like youre in Log in to your My Stream Account Dont have a My. Please enter your location to view rates. Where "input.xml" is your current XML file, and "cleaned.xml" is a name for the fixed file. Please verify the location you need service. ![]() If that doesn't work, you can try the following command: This should fix up some common line ending issues which sometimes cause Rosetta to choke (I haven't seen it happen here, though). My first recommendation is to run your XML through the dos2unix program. If I had to guess, I'd say that there's some sort of odd whitespace in the XML which the validator is fine with, but the parser is choking on. Your script passed the validation stage (which is where syntax errors should be caught), but wasn't able to be parsed. : 1 jobs considered, 1 jobs attempted in 19 secondsĮrror: Exception caught by rosetta_scripts application:įile: src/protocols/jd2/:329ġ jobs failed check output for error messages : job failed, reporting bad input other jobs of same input will be canceled: 1mj5_0001 Tag::read - parse error - file:istream line:1 column:1 - ^Įrror: Treating failure as bad input canceling similar jobs Tag::read - parse error - file:istream line:1 column:1. Tag::read - parse error, printing backtrace. Protocols.rosetta_scripts.RosettaScriptsParser: Validating input script.Įrror: ERROR: Exception caught by JobDistributor while trying to get pose from job '1mj5_0001' Protocols.rosetta_scripts.RosettaScriptsParser: Initializing schema validator. Now, select a time duration from the list of options. Next, click on the Logged dropdown menu to select the duration for which you want to check the logs. Protocols.rosetta_scripts.RosettaScriptsParser. Open the Event Viewer, navigate to the particular category of logs from the left, and then click on Filter Current Log on the right. Protocols.rosetta_scripts.RosettaScriptsParser: Generating XML Schema for rosetta_scripts. Rotocols.rosetta_scripts.RosettaScriptsParser: dock_design_filename=docking.xml enum QTextStream::NumberFlag flags QTextStream::NumberFlags. Rosetta_ -in:file::s 1mj5.pdb -parser:protocol docking.xml -extra_res_fa r_lig.params Same as AlignRight, except that the sign of a number is flush left. Go into Settings > General > Reset > Reset Network Settings and select Reset Network Settings. If you have already tried all of these steps, but you still can’t connect, try resetting your Wi-Fi settings on your iPad or iPhone. I'm trying to use the highres docking protocol with rosetta3.9 and I still get this error (see below), no matter what I do with the xml protocol (attached): Go into your Wi-Fi settings on your iPad or iPhone. ![]()
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